Christopher Schröder

Yes, I've also thought about a comma separated list. But it might be that a single sample might have a different role for different groups. A comma separated list would...

Oh sorry, never mind. The input bam seems to have missing mates for some reads. But just to make sure: Bazam outputs all reads and doesn't filter anything (except single...

Same here!

Don't worry, we all know what it is like to be busy. Thanks for answering! It seems that I completely misunderstand something fundamentally. In my opinion DV = |RNAMES|. I...

I've looked through your code and I've found the reason. You are rescaling the number of supports for long insertions https://github.com/fritzsedlazeck/Sniffles/blob/fd31ee3962d7c588752e1926176c79912691d54e/src/sniffles/postprocessing.py#L142-L148 in order to increase the sensitivity to detect them...

yes `tremor-ataxia-bounds.txt` was generated by `STRling merge `as well as all predecessor .bin files by `STRling extract`. I performed the column substraction and there are no negatives, but a lot...

the error happens again, now with additional information ``` using first reads in fragment_length_distribution calculation as there were not enough Read 15892 bounds from results/strling/merge/all-bounds.reduced.txt fatal.nim(49) sysFatal Error: unhandled exception:...

I have the same problem :-/

Yes

I am a bit busy at the moment and to be honest I dont see the point in this test. There are only a couple of read pairs for this...