MedicalDataAugmentationTool-VerSe

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Dataset has been changed

5

I think many things regarding the dataset have been changed (filenames, orientation,..etc), check the updated dataset here: https://github.com/anjany/verse I will try to add a PR to address the new changes.

idhamari

main_vertebrea_localization problem

5

Thanks for sharing the code. I had a problem running the main_vertebrace_localization.py , which generated an empty predictive image with no content in it.The error contents is as follows: Traceback...

Huizhu-chen

Based on these [Slicer Wiki](https://slicer.readthedocs.io/en/latest/user_guide/coordinate_systems.html) and [ITK wiki](https://itk.org/Wiki/ITK/MetaIO/Documentation) I think the [direction matrix](https://github.com/christianpayer/MedicalDataAugmentationTool-VerSe/blob/51569f9680e34b0e6dd74bc33587204cf4b2afdf/verse2020/other/preprocess.py#L19 ) used in the code can also be called LPS orientation, not just RAI, it is matter...

idhamari

A question

2

Thanks for sharing the code. I had a problem running the main_vertebrace_localization.py , which generated an empty predictive image with no content in it. For example, the verse004_prediction.mha is empty,...

minyang0811

“self.optimizer_sigma" doesn't seem to be defined

1

Hello! In the code of "vers2020", “self.optimizer_sigma" doesn't seem to be defined,and When the “ self.learnable_sigma" is true, the code does not work. How to make sigma learnable?

Confusedisprecious

run main_spine_localization.py ,loss_net = nan

6

When training main_spine_localization.py, loss_net = nan. I had check all parameter,but all this. Do you know why? thank you 09:37:40: train iter: 0 loss_net: 0.3521 norm: 4.5986 norm_average: 9.9460 seconds:...

HongfeiJia

how can i create landmarks.csv file for my custom dataset?

1

i want to add more dataset to improve performance but i have issue with creating landmarks labels for the dataset, any software that can help with labels?

faheem-khaskheli

alf-wangzhi

TypeError: '<=' not supported between instances of 'float' and 'NoneType'

1

when i run main_spine_localization.py file. I get the simgle import error: TypeError: '

Cherishlu

How to verify the output results?

1

This codes looks good. however it is too complicated due to the lack of instructions. After completion of training and inference, I can get the *.mha files and bbs.csv How...

hwjung92