celfie

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Hello, I'm trying to run CelFiE from the celfie_env conda enviroment Command: `python /path/celfie/TIMs/tim.py input_path output 100 27 15 2` And I get the following output: ``` Traceback (most recent...

efratushava

hi Christa, our thesis student added a random seed flag for numpy in celfie to that the output is reproducible (https://github.com/rmvpaeme/celfie/blob/ad1ff869ad08cc382a84ff7addd0af59d74a1519/EM/em.py#L360). It might be interesting to add this to the...

rmvpaeme

CelFiE with normal lung tissue samples

5

Hi Christa, Thank you for developing CelFiE. I am trying to run CelFiE on 2 samples (adult normal lung tissues-WGBS). After getting the coverage file from Bismark, I ran your...

seifudd