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Published 20 hours ago • verified publisher icon chrishah

Can I use MITObim with Nanopore reads?

Open hungweichen0327 opened this issue 4 years ago • 2 comments

Dear community,

According to the manual of MITObim, this useful software can use PacBio long reads for mitochondria assembly. Can I use Nanopore long reads, too? Thank you.

hungweichen0327 avatar Jun 14 '21 06:06 hungweichen0327

nobody？

L1curry avatar Mar 13 '23 12:03 L1curry

Hi, MITObim and the version of the assembler (MIRA) it currently supports was developed before Nanopore came up and it hasn't yet been tested with this kind of data, at least not by me, I am afraid. Worth trying with the --platform pacbio setting, though. cheers, Christoph

chrishah avatar Mar 13 '23 12:03 chrishah