Chris Gorgolewski

Results 99 issues of Chris Gorgolewski

VisualQC implements, segmentation, coregistration, and timeseries (including carpet) plots. See https://raamana.github.io/visualqc/readme.html for more details Benefits: - If VisualQC becomes a collaborative project reused by multiple packages it will be a...

enhancement
question
plotting
effort:high
impact:low

Noticeable if you are reviewing dozens of reports on a long haul flight. Background reading: https://developers.google.com/web/fundamentals/design-and-ux/animations/animations-and-performance https://developer.mozilla.org/en-US/Apps/Fundamentals/Performance/CSS_JavaScript_animation_performance

plotting
effort:high
impact:high

Using this mask: ![image](https://cloud.githubusercontent.com/assets/238759/24308674/39e91c96-1086-11e7-8997-a7186e4283d6.png) https://dl.dropboxusercontent.com/u/18255196/secondstepmask.nii.gz Inspired from the approach in LeadDB: ``` /Users/andreashorn/Downloads/antsdata_Nick/antsRegistration_mod.maci64 --verbose 1 --dimensionality 3 --float 1 \ --output [glanat,glanat.nii] --interpolation Linear --use-histogram-matching 1 \ --write-composite-transform 1 \...

enhancement
effort:high
impact:medium

This would allow for firefox and safari compatibility https://github.com/google/guetzli

plotting
effort:medium
impact:low

It looks like a spm related error rather than our tool, I CC Chris who wrote the code, except indeed this little interface with SPM that I wrote .. but...

See: https://github.com/BIDS-Apps/freesurfer/pull/16#issuecomment-274333448

- [ ] add download and extraction of https://www.doc.ic.ac.uk/~ecr05/MSM_HOCR_v1/MSM_HOCR_v1-download.tgz - [ ] update PATH to point to the Ubuntu MSM binaries - [ ] add an command line option to...

enhancement

This idea was originally suggested by @KirstieJane who is struggling with this issue currently. Even though I personally got Singularity installed at all systems I needed it I know there...