readDepth

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Error in "rdo.mapCor.gcCor = rd.gcCorrect(rdo.mapCor)"

1

Hi~ When I run "rdo.mapCor.gcCor = rd.gcCorrect(rdo.mapCor)", I got the error "Error in { : task 1 failed - "non-numeric argument to binary operator". I downloaded hg19 annotations from https://xfer.genome.wustl.edu/gxfer1/project/cancer-genomics/readDepth/index.html....

Suger0917

Error in (amed + 1):(bmed - 1) : result would be too long a vector

2

Hi, when I run ReadDepth on WGBS data, the errors appeared: Error in (amed + 1):(bmed - 1) : result would be too long a vector Calls: new ... binParams...

LiyanJi-code

Help Needed with readDepth Tool Installation and Usage

6

I am reaching out to you regarding an issue I encountered while attempting to use your readDepth tool for copy number alteration analysis on your test data. Specifically, I installed...

indxAi

Running time is too long

1

Running a bed with 16,000,000 records has taken more than 10 hours, but it is still not completed. Can I split the bed file and run it again?

newpest

cannot open the connection

4

> rdo = new("rdObject") Error in { : task 1 failed - "cannot open the connection" In addition: There were 24 warnings (use warnings() to see them)

newpest