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read haploid dosages with pgenlib

5

Is it possible to read haploid dosages with `pgenlib.PgenReader`? thanks, Jared

23andme-jaredo

PLINK v1.9 `sprintf()` compilation warnings: Does a way to silence/fix them exist?

3

Hi everyone, I am curious if someone on an M-series Apple Macintosh computer was able to build PLINK version 1.9 without getting the `sprintf()` deprecation warnings when compiling/building from source....

VicBoss1984

Feature Request: reading variants as sparse in pgenlibr

5

Hi, We rely on the [C++ pgenlibr](https://github.com/chrchang/plink-ng/blob/master/2.0/pgenlibr/src/pgenlibr.cpp) to read PGEN format genotype data in REGENIE. The current functions available (RPgenReader::ReadIntHardcalls/RPgenReader::Read) reads in the genotype data for all samples. In the...

joellembatchou

Loading PVAR in pgenlibr

2

I'm working on an R package that reads PGEN files and performs statistical analysis in C++ via Rcpp (https://github.com/chrchang/plink-ng/issues/283). `pgenlibr` provides almost everything a user needs. The R function `pgenlibr::NewPvar()`...

GabrielHoffman