CentOs7.9 install plink1.9 error

[gaozejie]

My operating system version is CentOS 7.9, and Plink version is 1.9. I have already executed yum install -y gcc gcc-c++ libstdc++ gcc-gfortran glibc glibc-devel make blas-devel lapack lapack-devel atlas-devel, but when executing ./plink_first_compile, it prompts /opt/rh/devtoolset-11/root/usr/libexec/gcc/x86_64-redhat-linux/11/ld: not found -lcblas /opt/rh/devtoolset-11/root/usr/libexec/gcc/x86_64-redhat-linux/11/ld: not found -latlas, What should I do?

[chrchang]

Have you tried installing the libatlas-dev and libatlas-base-dev packages, which the documentation mentions as necessary for Ubuntu?

[gaozejie]

Have you tried installing the libatlas-dev and libatlas-base-dev packages, which the documentation mentions as necessary for Ubuntu?

The installation of these two packages prompts that they cannot be found, even if I have already installed the extended rpm source. I switched the operating system to Linux version 4.19.90-52.22.v2207.ky10.aarch64 ([email protected]) (gcc version 7.3.0 (GCC)) #1 SMP Tue Mar 14 11:52:45 CST 2023, which includes these two packages. But continuing to compile still reports error: g++ plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib .o pigz.o yarn.o Rconnection.o hfile.o bgzf.o -L/usr/lib64/atlas -llapack -lblas -lcblas -latlas -lm -lpthread -ldl -L. ../zlib-1.3/libz.so.1.3 -o pli nk /bin/ld: plink_cluster.o: in function mds_plot(char*, char*, unsigned long*, unsigned long, unsigned int*, char*, unsigned int, unsigned int, unsigned long, unsigned int, unsigned int, unsigned int*, unsigned int*, unsigned int, unsigned int, unsigned int, double*)': /plink/plink-ng-master/1.9/plink_cluster.c:3079: undefined reference to dgesdd_' /bin/ld: /plink/plink-ng-master/1.9/plink_cluster.c:3085: undefined reference to dgesdd_' /bin/ld: plink_cluster.o: in function mds_plot_eigendecomp(char*, char*, unsigned long*, unsigned long, unsigned int*, char*, unsigned int, unsigned i nt, unsigned long, unsigned int, unsigned int, unsigned int*, unsigned int*, unsigned int, unsigned int, unsigned int, double*)': /plink/plink-ng-master/1.9/plink_cluster.c:3382: undefined reference to dsyevr_' /bin/ld: /plink/plink-ng-master/1.9/plink_cluster.c:3393: undefined reference to dsyevr_' /bin/ld: plink_calc.o: in function calc_pca(IO_FILE*, unsigned long, char*, char*, unsigned long, Rel_info*, unsigned long, unsigned long*, unsigned long, char*, unsigned long, char**, unsigned long*, unsigned long, unsigned long*, unsigned long, unsigned long*, unsigned long, char*, unsigned long, double*, Chrom_info*, double*)': /plink/plink-ng-master/1.9/plink_calc.c:7108: undefined reference to dsyevr_' /bin/ld: /plink/plink-ng-master/1.9/plink_calc.c:7119: undefined reference to dsyevr' /bin/ld: plink_matrix.o: in function invert_matrix_checked(int, double*, int*, double*)': /plink/plink-ng-master/1.9/plink_matrix.c:310: undefined reference to dlange_' /bin/ld: /plink/plink-ng-master/1.9/plink_matrix.c:317: undefined reference to dgecon_' collect2: error：ld return 1 make: *** [Makefile:81：plink] error 1

[chrchang]

Ok, try replacing "-lcblas -latlas" in the Makefile with "-lsatlas". I just tried starting up a new EC2 instance with a CentOS 7.9 AMI, and that did the trick there.