coloc
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chr1swallace
Repo for the R package coloc
hello, I am a beginner of coloc user, I got error when runing check_dataset and coloc.abf, my input list dose not have any NA, here is my code ########################## #check...
Dear Chris and collaborators, I am trying to run sensitivity analysis over my coloc object. I obtained this using priors determined based on the number of SNPs in my testing...
Hi Chris, I was using runsusie but for some regions, it doesn't give me any credible sets. However, when I run the same dataset using susieR, I get credible sets....
I use PLINK to generate LD matrix and then try to run coloc.susie(), but I got this error. Could you please help me with it? Thank you for your time....
Hi, The res$summary results I get are as follows: nsnps PP.H0.abf PP.H1.abf PP.H2.abf PP.H3.abf PP.H4.abf 2.863000e+03 4.089385e-20 6.817232e-18 2.355242e-04 3.830173e-02 9.614627e-01 But when I opened res$results, I found that the...
I encountered an issue when using the package, specifically with the coloc.susie function. After preparing my datasets and running runsusie on each, I attempted to perform colocalization analysis using coloc.susie....
Hi @chr1swallace , Many thanks for building such a useful package with various input considerations and up-to-date coordination with SuSiE. My question is whether the effect size estimates, which could...
In the sensitivity function it was written min(p1,p1). I substituted it with min(p1,p2). Additionally, with small numbers x is not always equivalent to 10^log10(x), because of this my analysis stopped...
Apologies if this question has already been asked/answered. I could not find any other issues that seemed related. I am using `coloc.susie()` to run colocalization and I'm curious how the...
