No picture left when stride_size == patch_size

[dan1elR]

In the script make_output_unet no picture is left after cropping away the padding if stride_size == patch_size. Additionally, as padding with this setting was only applied at the outside, the inner pictures get cropped though nothing was padded here.

https://github.com/choosehappy/PytorchDigitalPathology/blob/48e10d6c42c45f5abc8589186e6409eb4a341bf6/segmentation_epistroma_unet/make_output_unet_cmd.py#L142

[dan1elR]

Does it seam right, to change the order and at first concatenate the tiles and afterwards removing half stride (dimensions need adjustment)?

[choosehappy]

These parameters were very carefully chosen for the size of the network, input, stride, and output sizes. it is not intended as a general solution, but instead a jumping-off point for others to modify

On Mon, Mar 8, 2021 at 5:44 PM Murmeltier105 [email protected] wrote:

Does it seam right, to change the order and at first concatenate the tiles and afterwards removing half stride (dimensions need adjustment)?

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