Configuration Changes needed

[tasvora]

In order to run Histoqc , I had to add the full path for the config file path to the config file python -m histoqc -c histoqc/config/config_v2.1.ini -n 3 "*.svs"

Need to resolve this.

[choosehappy]

I think the logic should be

if args.config file exists --- > config.read (this is currently done) if args.config file does not exist, try to load a template with that name (this is not done) if args.config does not exist, load the template default (this is currently done)

On Wed, Sep 8, 2021 at 4:18 PM Tasneem @.***> wrote:

In order to run Histoqc , I had to add the full path for the config file path to the config file python -m histoqc -c histoqc/config/config_v2.1.ini -n 3 "*.svs"

Need to resolve this.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/choosehappy/HistoQC/issues/201, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACJ3XTAJGZOBILS5KAOLD3DUA5WBTANCNFSM5DU34BZA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.