Question On PRS.Best File

[SamGreen52]

The PRS. best file is shown to report all samples(n>1000) but the report says only 217 samples were included in the analysis; this was on purpose with the log message attached below.

Therefore, does the PRS.best file reliably show the PRS score for only 217 samples, and the other PRS scores from samples not included in the analysis can be ignored? If not, how can I accomplish this objective?

Thank you so much!

-Sam

LOG MESSAGE: Phenotype is a binary phenotype 1004 sample(s) without phenotype 144 control(s) 73 case(s)

Processing the covariate file: OCD_2.cov

Include Covariates: Name Missing Number of levels Sex 0 -

After reading the covariate file, 217 sample(s) included in the analysis

There are 1 region(s)/phenotype(s) with p-value > 0.1 (not significant).