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Examples and own tests are not working: Stuck at file not found

Open gsabbih6 opened this issue 2 years ago • 0 comments

Please help, the examples are not working

(mdsim1) PS C:\Users\fzp281\Downloads\yank-examples-master\examples\binding\host-guest> yank script --yaml=repex.yaml nvcc warning : The 'compute_35', 'compute_37', 'compute_50', 'sm_35', 'sm_37' and 'sm_50' architectures are deprecated, and may be removed in a future release (Use -Wno-deprecated-gpu-targets to suppress warning). nvcc fatal : Cannot find compiler 'cl.exe' in PATH 2021-10-14 14:16:07,794: Setting OpenCL platform to use precision model 'mixed'. 2021-10-14 14:16:11,729: Single node: executing <function ExperimentBuilder._check_resume at 0x00000226998B3730> 2021-10-14 14:16:11,734: Running _setup_molecules serially. 2021-10-14 14:16:17,452: Fixing net charge from -0.0020039999999994507 to 0.0 2021-10-14 14:16:19,163: Running get_system serially. 2021-10-14 14:16:19,165: Setting up the systems for CB7 and B2 using solvent pme 2021-10-14 14:16:19,166: Setting up solvent phase Traceback (most recent call last): File "C:\Users\fzp281\Anaconda3\envs\mdsim1\Scripts\yank-script.py", line 9, in <module> sys.exit(main()) File "C:\Users\fzp281\Anaconda3\envs\mdsim1\lib\site-packages\yank\cli.py", line 73, in main dispatched = getattr(commands, command).dispatch(command_args) File "C:\Users\fzp281\Anaconda3\envs\mdsim1\lib\site-packages\yank\commands\script.py", line 155, in dispatch yaml_builder.run_experiments(write_status=write_status) File "C:\Users\fzp281\Anaconda3\envs\mdsim1\lib\site-packages\yank\experiment.py", line 737, in run_experiments self._setup_experiments() File "C:\Users\fzp281\Anaconda3\envs\mdsim1\lib\site-packages\yank\experiment.py", line 2325, in _setup_experiments self._db.setup_all_systems() File "C:\Users\fzp281\Anaconda3\envs\mdsim1\lib\site-packages\yank\pipeline.py", line 1397, in setup_all_systems send_results_to=None, group_size=1, sync_nodes=True) File "C:\Users\fzp281\Anaconda3\envs\mdsim1\lib\site-packages\mpiplus\mpiplus.py", line 512, in distribute all_results = [task(job_args, *other_args, **kwargs) for job_args in distributed_args] File "C:\Users\fzp281\Anaconda3\envs\mdsim1\lib\site-packages\mpiplus\mpiplus.py", line 512, in <listcomp> all_results = [task(job_args, *other_args, **kwargs) for job_args in distributed_args] File "C:\Users\fzp281\Anaconda3\envs\mdsim1\lib\site-packages\yank\pipeline.py", line 1337, in get_system 0, system_parameters, solvent_id, ligand_id) File "C:\Users\fzp281\Anaconda3\envs\mdsim1\lib\site-packages\yank\pipeline.py", line 1939, in _setup_system warnings = tleap.run() File "C:\Users\fzp281\Anaconda3\envs\mdsim1\lib\site-packages\yank\utils.py", line 1702, in run leap_output = subprocess.check_output(['tleap', '-f', 'leap.in']).decode() File "C:\Users\fzp281\Anaconda3\envs\mdsim1\lib\subprocess.py", line 356, in check_output **kwargs).stdout File "C:\Users\fzp281\Anaconda3\envs\mdsim1\lib\subprocess.py", line 423, in run with Popen(*popenargs, **kwargs) as process: File "C:\Users\fzp281\Anaconda3\envs\mdsim1\lib\subprocess.py", line 729, in __init__ restore_signals, start_new_session) File "C:\Users\fzp281\Anaconda3\envs\mdsim1\lib\subprocess.py", line 1017, in _execute_child startupinfo) FileNotFoundError: [WinError 2] The system cannot find the file specified

gsabbih6 avatar Oct 14 '21 18:10 gsabbih6