N50 values

Open mallen6 opened this issue 2 years ago • 0 comments

Hello, I noticed that my CheckM2 results are giving slightly higher N50 values for my MAGs than the CheckM1 outputs.

In all cases the genome sizes and % GC content are being reported as identical.

Does CheckM2 apply a contig length cutoff? Or is there some other reason this might be happening?

Thanks, M

Oct 18 '23 00:10 mallen6