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checkmsum issue

Open francesco-ricci opened this issue 1 year ago • 2 comments

Hello everyone,

after installing checkm2 with the following command: conda create -n checkm2 -c bioconda -c conda-forge checkm2 python=3.8

and running it with the following: checkm2 predict --threads 20 --input dereplicated_genome/ --output-directory checkm2 -x fa --database_path Funcgenes_51_Dec2021.dmnd

I get this ERROR: One of the files CheckM2 relies on has an incorrect checksum. Please re-download CheckM2.

Of course I reinstalled CheckM2 but without luck, this ERROR keeps happening.

Thanks for your help!

francesco-ricci avatar Sep 20 '23 00:09 francesco-ricci

Hi,

Does checkm2 testrun complete successfully? Are you using the default checkm2 diamond database?

chklovski avatar Oct 03 '23 03:10 chklovski

Hi im not using the checkm2 diamond database rather different version (bur diamond db),

(checkm2) 12:35:04 🖤 barc@accessv02:~/Git_Clone_sss/checkm2 > diamond dbinfo --db /home/projects/zeevid/Data/Databases/blastdb/nr_tax/nr_tax.dmnd
diamond v2.0.4.142 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org

Database format version = 3
Diamond build = 153
Sequences = 526308523
Letters = 207134680681

Do you think that's making the error?

brchn6 avatar Jun 03 '24 09:06 brchn6