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Recreate p_ctg from p_utg

Open diego-rt opened this issue 1 month ago • 3 comments

Hello,

I'm trying to curate the assembly produced by hifiasm by reassembling the reads at the assembly tips with different parameters and assemblers. This would be bit more efficient if I could edit the assembly graph (manually add/remove or update nodes and edges), and recreate the contigs as hifiasm(UL) does. Do you by any chance have any code that you could share that could take the p_utg from the UL pipeline as input and output the primary p_ctg/hap1/hap2 graphs?

Thank you so much in advance!

diego-rt avatar May 21 '24 14:05 diego-rt