issue in generating hap1 and hap2 asm files

[dabitz]

Reads has been loaded. Loading ma_hit_ts from disk... ma_hit_ts has been read. Loading ma_hit_ts from disk... ma_hit_ts has been read. [M::ha_assemble::422.1890.88] ==> loaded corrected reads and overlaps from disk [M::ha_opt_update_cov_min] updated max_n_chain to 600 [M::purge_dups] homozygous read coverage threshold: 120 [M::purge_dups] purge duplication coverage threshold: 150 [M::ug_ext_gfa::] # tips::206 Writing raw unitig GFA to disk... Writing processed unitig GFA to disk... [M::purge_dups] homozygous read coverage threshold: 120 [M::purge_dups] purge duplication coverage threshold: 150 [M::mc_solve:: # edges: 236] [M::mc_solve_core_adv::0.159] ==> Partition [M::adjust_utg_by_primary] primary contig coverage range: [102, infinity] Writing Rhync_tenuis_6344B.asm.hic.p_ctg.gfa to disk... [M::ha_opt_update_cov] updated max_n_chain to 600 [M::gen_trans_base_count_comp::415.503] ==> Qualification [M::build_unitig_index::70.310] ==> Counting [M::build_unitig_index::26.486] ==> Memory allocating [M::build_unitig_index::89.328] ==> Filling pos [M::build_unitig_index::0.730] ==> Sorting pos [M::build_unitig_index::186.862] ==> HiC index has been built [M::write_hc_pt_index] Index has been written. [M::alignment_worker_pipeline::173.079] ==> Qualification [M::dedup_hits::2.046] ==> Dedup [M::dedup_hits::1.912] ==> Dedup [M::stat] # misjoined unitigs: 2 (N50: 9125929); # corrected unitigs: 4 (N50: 7623911) [M::adjust_weight_kv_u_trans_advance::1.341] [M::mc_solve:: # edges: 17484] [M::mb_solve_core::0.357] ==> Partition [M::mc_solve_core_adv::1.622] ==> Partition [M::adjust_weight_kv_u_trans_advance::9.612] [M::mc_solve:: # edges: 17780] [M::mb_solve_core::0.209] ==> Partition [M::mc_solve_core_adv::1.561] ==> Partition [M::adjust_weight_kv_u_trans_advance::10.881] [M::mc_solve:: # edges: 17780] [M::mb_solve_core::0.193] ==> Partition [M::mc_solve_core_adv::1.274] ==> Partition [M::stat] # heterozygous bases: 771499816; # homozygous bases: 12253610 [M::reduce_hamming_error_adv::0.320] # inserted edges: 0, # fixed bubbles: 0 [M::adjust_utg_by_trio] primary contig coverage range: [102, infinity] [M::recall_arcs] # transitive arcs::20 [M::recall_arcs] # new arcs::92930, # old arcs::2108 hifiasm: Overlaps.cpp:26002: void asg_arc_rest(asg_t, asg_t*, uint32_t, uint32_t, ma_ug_t*, kvec_asg_arc_t_warp*, ma_hit_t_alloc*, ma_sub_t*, int32_t, int32_t, int32_t, uint32_t*): Assertion `get_edge_from_source(src_e, cov, NULL, max_hang, min_ovlp, rv, rw, &t)' failed. hifiasm.sh: line 1: 56003 Aborted hifiasm -o 6344B.asm -t40 --h1 6287_A_R1.fastq.gz --h2 6287_A_R2.fastq.gz *.fastq