hifiasm icon indicating copy to clipboard operation
hifiasm copied to clipboard

Information of All-versus-all pairwise alignment

Open xuxingyubio opened this issue 9 months ago • 5 comments

Dear Hifiasm community and developers,

This is a very important piece of software. Now I'm having some problems.

How can I obtain information on All-versus-all pairwise alignment to view the overlapping areas between reads and the coverage information of such areas. Hifiasm seems to have used this information when correcting reads. How can I extract this information? I want to look at some of the repetitive regions of the genome.

xuxingyubio avatar Nov 05 '23 06:11 xuxingyubio