assemble a genome with pooled sequence reads from multiple individuals

[yimingweng]

Hi,

Thank you for making this excellent tool. I was wondering whether I should set up --n-hap to 10 for my hifi reads comprising 5 individual of small insect individuals (diploid species, and they are from same population)? Or instead I should use --n-hap 2 with multiple runs of purging steps. Thank you.

YiMing

[chhylp123]

It's hard to say. Probably you could have a try using different values for --n-hap with the same bin files.

[yimingweng]

Thank you for the answer. I might just try that.