Hi-C integrated assembly result selection

[xiaobaiymq]

hello, I get two results of the Hi-C integrated assembly : hic.hap1.p_ctg.gfa and hic.hap2.p_ctg.gfa hic.hap1.p_ctg.gfa :354 contigs, N50 28114168bp, N75 28114168bp hic.hap2.p_ctg.gfa :180 contigs, N50 30303413bp, N75 29191692bp

Which one should I choose for follow-up work?

[chhylp123]

If your sample is diploid, each of gfa represents one haplotype. So you should use both of them.

[xiaobaiymq]

Do you still need to perform polish in the follow-up? Or directly scaffold

2021年10月25日 22:26，chhylp123 @.***> 写道：

If your sample is diploid, each of gfa represents one haplotype. So you should use both of them.

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[chhylp123]

I suggest no need to do polish.