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could not load LC/MS data

Open suhande opened this issue 2 years ago • 2 comments

Hi, I could not open a mzXML/mzML file, I can open it using openchrom or chemclipse, here is error message: java.util.NoSuchElementException at java.util.TreeMap.key(TreeMap.java:1327) at java.util.TreeMap.firstKey(TreeMap.java:290) at umich.ms.batmass.gui.viewers.spectrum.components.SpectraViewerComponent.(SpectraViewerComponent.java:115) at umich.ms.batmass.gui.viewers.spectrum.SpectraViewerTopComponent.initSpectrumPanel(SpectraViewerTopComponent.java:157) at umich.ms.batmass.gui.viewers.spectrum.SpectraViewerTopComponent.access$200(SpectraViewerTopComponent.java:64) at umich.ms.batmass.gui.viewers.spectrum.SpectraViewerTopComponent$2.run(SpectraViewerTopComponent.java:115) at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758) at java.awt.EventQueue.access$500(EventQueue.java:97) at java.awt.EventQueue$3.run(EventQueue.java:709) at java.awt.EventQueue$3.run(EventQueue.java:703) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74) at java.awt.EventQueue.dispatchEvent(EventQueue.java:728) at org.netbeans.core.TimableEventQueue.dispatchEvent(TimableEventQueue.java:159) [catch] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

suhande avatar Dec 22 '21 01:12 suhande

[https://github.com/HUPO-PSI/mzML/tree/master/examples] here are the files i used

suhande avatar Dec 22 '21 01:12 suhande

I encourage you to try some real world mzML files converted with msconvert program from ProteoWizard. Which file specifically could you not view?

chhh avatar Dec 23 '21 10:12 chhh