chethega

How would I write X --> Y catalyzed by Z? One could either write `X + Z --> Y + Z`, or one could write `f(Z), X --> Y`. The...

Thanks, so we can really get everything we need! Giving optional names (a `Symbol`) to reactions is useful because I'd like the output and network to correspond to the names...

As a third (optional) parameter sounds nice. If we want to be future-safe, maybe it is time to go for keywords (who knows what kind of optional metadata we may...

Re debugging networks: I encountered the following bug classes: (1) Handwritten models have typos. A normalization scheme that lists species and parameters is quick at catching those. (2) Imported models...

``` model = @reaction_network type=rn_type_3 noise_scaling=Eta begin (p,d), X ↔Y k11, X --> Z, end p d k11 set_species_order(model,[Z,X,Y]) some_other_option(mode,whatever) ``` is executable code and needs julia. ``` model =...

Ah, ok, I now understand now DSL problem; I failed at terminology. Most of you meant by "DSL" a set of macros or definitions, that allow one to write text...

>It is also tricky to convert cycles to time spend. If we use this method it should be opt-in and we need to method variance and overhead. Cycles spent is...

The same [PoC](https://github.com/MikeInnes/BSON.jl/issues/50) as for BSON.jl applies for JLD2: ``` julia> using JLD2, FileIO julia> struct SubArray{T,N,P,I,L} br=Base.Broadcast.Broadcasted(run, ([`cat /etc/passwd`],)); julia> v=SubArray{Any,1, Any,Tuple{Array{Int64,1}}, false}(br, ([1],), 0, 0); julia> w=SubArray{Any,1, Any,Tuple{Array{Int64,1}},...

Do we have, or can we get, an option to force evals/sample = 1 with setup? This is essential for every destructive benchmark. There are quite a few destructive base...

>Yes, this has existed the entire time: see the evals keyword argument. Thanks! I looked at `BaseBenchmarks`; currently, we `tune!` all the `@benchmarkable`, which appears to override even explicitly set...