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Published 20 hours ago • verified publisher icon chembl

Configure ipython to work inside virtualenv.

Open mnowotka opened this issue 10 years ago • 3 comments

Right now our ipython server is using globally installed software. To make it more modular and clean it should have it's own virtualenv.

mnowotka avatar Oct 16 '14 14:10 mnowotka

LIke

madgpap avatar Oct 16 '14 15:10 madgpap

Probably, but, assuming myChEMBL is intended to be used as a headless server, it doesn't make much difference.

I can see that it might be useful to have notebooks using diiferent versions of packages (e.g. in cases like George's where an update breaks a workflow), but managing for the user could be confusing (different notebook servers running in different virtualenvs accessed by different links from the launcher?).

On 16/10/2014 15:54, Michał Nowotka wrote:

Right now our |ipython| server is using globally installed software. To make it more modular and clean it should have it's own virtualenv.

— Reply to this email directly or view it on GitHub https://github.com/chembl/mychembl/issues/3.

Dr Francis L Atkinson

Chemogenomics Group European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom

(01223) 494473

flatkinson avatar Oct 16 '14 15:10 flatkinson

we are using conda

madgpap avatar Jun 15 '16 09:06 madgpap