Ignore genes that are not multiples of 3

[jckhearn]

Hello Chase,

I'm using SNPGenie on some genome-wide pooled sequencing. SNPGenie stops at the start when it finds loci in the gtf that are not multiples of 3. Is it possible for a SNPGenie option to ignore these loci (with a note in the log) and carry on with an analysis?

This would speed up batch-processing considerably and not affect downstream analyses in my case.

Best wishes, Jack

[singing-scientist]

Dear Jack:

Thanks very much for using SNPGenie and for the good suggestion. Unfortunately, I am too swamped at the moment to make the improvement you recommend, but I will leave this issue open with the hope to get to it soon. In the meantime, I feel it best to leave as-is, as modifying SNPGenie to carry on with analysis could lead to unintended bugs, or else erroneous results in the case of new users. Please do let me know if you have any other suggestions.

With gratitude, Chase

[jckhearn]

Okay thanks!