IDBacApp
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chasemc
Issue getting updates to load
I downloaded the IDBAC softare ver 1.1.10 and clicked on "check for updates" but it has frozen several times trying to update to the latest stable version (2.0.0). We tried this several times and I even had our departmental IT guy try to get the update. Any help is appreciated.
Thanks @ehotze.
The easy installer won't update to 2.0 because of wider software issues not in control of IDBac.
If you'd like to try the 2.0 you can follow the instructions in the README (https://github.com/chasemc/IDBacApp/blob/master/README.md), however I would just suggest sticking with the downloadable version as it is the version used in the JOVE article and the other major IDBac publications.
The version 2.0 does have some tweaks to the interface but is less supported and was mainly done to make the code easier to work with from R, not from the user interface.
Hi Chase, I am wondering if you have time in the next couple of weeks to have a Zoom about the IDBAC? I am still struggling with it. Any help would be appreciated.
Best, Eileen Eileen M. Hotze, Ph.D. Associate Teaching Professor Department of Undergraduate Biology University of Kansas 1200 Sunnyside Ave 1006 Haworth Hall Lawrence, KS 66045 785-864-1642
From: Chase Clark @.> Date: Wednesday, February 15, 2023 at 4:41 PM To: chasemc/IDBacApp @.> Cc: Hotze, Eileen Mary @.>, Mention @.> Subject: Re: [chasemc/IDBacApp] Issue getting updates to load (Issue #157)
The easy installer won't update to 2.0 because of wider software issues not in control of IDBac.
If you'd like to try the 2.0 you can follow the instructions in the README (https://github.com/chasemc/IDBacApp/blob/master/README.mdhttps://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fchasemc%2FIDBacApp%2Fblob%2Fmaster%2FREADME.md&data=05%7C01%7Cehotze%40ku.edu%7C3cf64a175f234a61708508db0fa5b933%7C3c176536afe643f5b96636feabbe3c1a%7C0%7C0%7C638120976678373782%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=FG9PBdgEbxU%2B%2BGmY3oTgJyshP4xycLUFFh6D01daXB0%3D&reserved=0), however I would just suggest sticking with the downloadable version as it is the version used in the JOVE article https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jove.com%2Fv%2F59219%2Fusing-the-open--source-maldi-tof--ms-idbac-pipeline-for-analysis-of-microbial-protein-and-specialized-metabolite-data&data=05%7C01%7Cehotze%40ku.edu%7C3cf64a175f234a61708508db0fa5b933%7C3c176536afe643f5b96636feabbe3c1a%7C0%7C0%7C638120976678373782%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=mQLfQyGYxN1ONau9fhdSE5Qa7thdMdR8CBmFhiUb23o%3D&reserved=0 and the other major IDBac publications.
The version 2.0 does have some tweaks to the interface but is less supported and was mainly done to make the code easier to work with from R, not from the user interface.
— Reply to this email directly, view it on GitHubhttps://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fchasemc%2FIDBacApp%2Fissues%2F157%23issuecomment-1432167043&data=05%7C01%7Cehotze%40ku.edu%7C3cf64a175f234a61708508db0fa5b933%7C3c176536afe643f5b96636feabbe3c1a%7C0%7C0%7C638120976678373782%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=f7RXI8WdeYdc%2FtB6cO%2FICUpoFqu%2BK0P6p0I8BAAhljo%3D&reserved=0, or unsubscribehttps://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FA55PY6IJQZZPYHHUHW5JWNLWXVLQBANCNFSM6AAAAAAU5H6NV4&data=05%7C01%7Cehotze%40ku.edu%7C3cf64a175f234a61708508db0fa5b933%7C3c176536afe643f5b96636feabbe3c1a%7C0%7C0%7C638120976678530018%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=xvlFSa3M25Y%2BqlhPcL2IibsowK0exv2bobaWqNIybXs%3D&reserved=0. You are receiving this because you were mentioned.Message ID: @.***>
Sure, thing. Generally Tuesday and Friday afternoons are busy, but otherwise my schedule is flexible
Chase Clark, PhD Postdoctoral Research Associate Computation and Informatics in Biology and Medicine (CIBM) Traineehttp://www.cibm.wisc.edu/ Kwan Lab (kwanlab.github.iohttp://kwanlab.github.io) Division of Pharmaceutical Sciences University of Wisconsin-Madison chasemc.github.io
http://chasemc.github.io [School of Pharmacy; University of Wisconsin-Madison] http://chasemc.github.io
From: ehotze @.> Sent: Friday, February 17, 2023 12:21 PM To: chasemc/IDBacApp @.> Cc: Chase Clark @.>; Comment @.> Subject: Re: [chasemc/IDBacApp] Issue getting updates to load (Issue #157)
Hi Chase, I am wondering if you have time in the next couple of weeks to have a Zoom about the IDBAC? I am still struggling with it. Any help would be appreciated.
Best, Eileen Eileen M. Hotze, Ph.D. Associate Teaching Professor Department of Undergraduate Biology University of Kansas 1200 Sunnyside Ave 1006 Haworth Hall Lawrence, KS 66045 785-864-1642
From: Chase Clark @.> Date: Wednesday, February 15, 2023 at 4:41 PM To: chasemc/IDBacApp @.> Cc: Hotze, Eileen Mary @.>, Mention @.> Subject: Re: [chasemc/IDBacApp] Issue getting updates to load (Issue #157)
The easy installer won't update to 2.0 because of wider software issues not in control of IDBac.
If you'd like to try the 2.0 you can follow the instructions in the README (https://github.com/chasemc/IDBacApp/blob/master/README.mdhttps://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fchasemc%2FIDBacApp%2Fblob%2Fmaster%2FREADME.md&data=05%7C01%7Cehotze%40ku.edu%7C3cf64a175f234a61708508db0fa5b933%7C3c176536afe643f5b96636feabbe3c1a%7C0%7C0%7C638120976678373782%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=FG9PBdgEbxU%2B%2BGmY3oTgJyshP4xycLUFFh6D01daXB0%3D&reserved=0), however I would just suggest sticking with the downloadable version as it is the version used in the JOVE article https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jove.com%2Fv%2F59219%2Fusing-the-open--source-maldi-tof--ms-idbac-pipeline-for-analysis-of-microbial-protein-and-specialized-metabolite-data&data=05%7C01%7Cehotze%40ku.edu%7C3cf64a175f234a61708508db0fa5b933%7C3c176536afe643f5b96636feabbe3c1a%7C0%7C0%7C638120976678373782%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=mQLfQyGYxN1ONau9fhdSE5Qa7thdMdR8CBmFhiUb23o%3D&reserved=0 and the other major IDBac publications.
The version 2.0 does have some tweaks to the interface but is less supported and was mainly done to make the code easier to work with from R, not from the user interface.
— Reply to this email directly, view it on GitHubhttps://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fchasemc%2FIDBacApp%2Fissues%2F157%23issuecomment-1432167043&data=05%7C01%7Cehotze%40ku.edu%7C3cf64a175f234a61708508db0fa5b933%7C3c176536afe643f5b96636feabbe3c1a%7C0%7C0%7C638120976678373782%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=f7RXI8WdeYdc%2FtB6cO%2FICUpoFqu%2BK0P6p0I8BAAhljo%3D&reserved=0, or unsubscribehttps://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FA55PY6IJQZZPYHHUHW5JWNLWXVLQBANCNFSM6AAAAAAU5H6NV4&data=05%7C01%7Cehotze%40ku.edu%7C3cf64a175f234a61708508db0fa5b933%7C3c176536afe643f5b96636feabbe3c1a%7C0%7C0%7C638120976678530018%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=xvlFSa3M25Y%2BqlhPcL2IibsowK0exv2bobaWqNIybXs%3D&reserved=0. You are receiving this because you were mentioned.Message ID: @.***>
— Reply to this email directly, view it on GitHubhttps://github.com/chasemc/IDBacApp/issues/157#issuecomment-1435064983, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AEOTINZXL72TJCCWKYFIQVLWX66RXANCNFSM6AAAAAAU5H6NV4. You are receiving this because you commented.Message ID: @.***>
What about next Wednesday at 1:30?
Best, Eileen Eileen M. Hotze, Ph.D. Associate Teaching Professor Department of Undergraduate Biology University of Kansas 1200 Sunnyside Ave 1006 Haworth Hall Lawrence, KS 66045 785-864-1642
From: Chase Clark @.> Date: Friday, February 17, 2023 at 12:23 PM To: chasemc/IDBacApp @.> Cc: Hotze, Eileen Mary @.>, Mention @.> Subject: Re: [chasemc/IDBacApp] Issue getting updates to load (Issue #157) Sure, thing. Generally Tuesday and Friday afternoons are busy, but otherwise my schedule is flexible
Chase Clark, PhD Postdoctoral Research Associate Computation and Informatics in Biology and Medicine (CIBM) Traineehttp://www.cibm.wisc.edu/ Kwan Lab (kwanlab.github.iohttp://kwanlab.github.io) Division of Pharmaceutical Sciences University of Wisconsin-Madison chasemc.github.io
http://chasemc.github.io [School of Pharmacy; University of Wisconsin-Madison] http://chasemc.github.io
From: ehotze @.> Sent: Friday, February 17, 2023 12:21 PM To: chasemc/IDBacApp @.> Cc: Chase Clark @.>; Comment @.> Subject: Re: [chasemc/IDBacApp] Issue getting updates to load (Issue #157)
Hi Chase, I am wondering if you have time in the next couple of weeks to have a Zoom about the IDBAC? I am still struggling with it. Any help would be appreciated.
Best, Eileen Eileen M. Hotze, Ph.D. Associate Teaching Professor Department of Undergraduate Biology University of Kansas 1200 Sunnyside Ave 1006 Haworth Hall Lawrence, KS 66045 785-864-1642
From: Chase Clark @.> Date: Wednesday, February 15, 2023 at 4:41 PM To: chasemc/IDBacApp @.> Cc: Hotze, Eileen Mary @.>, Mention @.> Subject: Re: [chasemc/IDBacApp] Issue getting updates to load (Issue #157)
The easy installer won't update to 2.0 because of wider software issues not in control of IDBac.
If you'd like to try the 2.0 you can follow the instructions in the README (https://github.com/chasemc/IDBacApp/blob/master/README.mdhttps://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fchasemc%2FIDBacApp%2Fblob%2Fmaster%2FREADME.md&data=05%7C01%7Cehotze%40ku.edu%7C3cf64a175f234a61708508db0fa5b933%7C3c176536afe643f5b96636feabbe3c1a%7C0%7C0%7C638120976678373782%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=FG9PBdgEbxU%2B%2BGmY3oTgJyshP4xycLUFFh6D01daXB0%3D&reserved=0), however I would just suggest sticking with the downloadable version as it is the version used in the JOVE article https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jove.com%2Fv%2F59219%2Fusing-the-open--source-maldi-tof--ms-idbac-pipeline-for-analysis-of-microbial-protein-and-specialized-metabolite-data&data=05%7C01%7Cehotze%40ku.edu%7C3cf64a175f234a61708508db0fa5b933%7C3c176536afe643f5b96636feabbe3c1a%7C0%7C0%7C638120976678373782%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=mQLfQyGYxN1ONau9fhdSE5Qa7thdMdR8CBmFhiUb23o%3D&reserved=0 and the other major IDBac publications.
The version 2.0 does have some tweaks to the interface but is less supported and was mainly done to make the code easier to work with from R, not from the user interface.
— Reply to this email directly, view it on GitHubhttps://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fchasemc%2FIDBacApp%2Fissues%2F157%23issuecomment-1432167043&data=05%7C01%7Cehotze%40ku.edu%7C3cf64a175f234a61708508db0fa5b933%7C3c176536afe643f5b96636feabbe3c1a%7C0%7C0%7C638120976678373782%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=f7RXI8WdeYdc%2FtB6cO%2FICUpoFqu%2BK0P6p0I8BAAhljo%3D&reserved=0, or unsubscribehttps://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FA55PY6IJQZZPYHHUHW5JWNLWXVLQBANCNFSM6AAAAAAU5H6NV4&data=05%7C01%7Cehotze%40ku.edu%7C3cf64a175f234a61708508db0fa5b933%7C3c176536afe643f5b96636feabbe3c1a%7C0%7C0%7C638120976678530018%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=xvlFSa3M25Y%2BqlhPcL2IibsowK0exv2bobaWqNIybXs%3D&reserved=0. You are receiving this because you were mentioned.Message ID: @.***>
— Reply to this email directly, view it on GitHubhttps://github.com/chasemc/IDBacApp/issues/157#issuecomment-1435064983, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AEOTINZXL72TJCCWKYFIQVLWX66RXANCNFSM6AAAAAAU5H6NV4. You are receiving this because you commented.Message ID: @.***>
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