Brad Chapman

Luca; Sorry about the issue. The server should be downloading these reference files from GenomeSpace initially but for some reason seems to be failing to. Apologies, I haven't had as...

Knowing the overhead of splitting these into separate CF packages this seems like a pretty large project. My vote would be to move things on an ad-hoc basis as we...

Jeremiah; Thanks so much for this discussion and the practical examples. I explored this more with some examples and agree that the extra cost is primarily read/write but think there...

Jeremiah; Wow, thank you for looking at and implementing this so quickly. I did some testing and am seeing intermittent deadlocks/hangs with multiple threads. `-t 0` always works but on...

Jeremiah; Thanks for the ideas for debugging this and helping keep us moving. I'm not sure why we're seeing different behavior but it locks up consistently for me on both...

Pjotr; Thanks for the workaround and all the suggestions. Is there any chance bio-vcf could make this easier internally? Ideally it would always return an array even with empty or...

Tamsen; Thanks so much for the orientation and offers to make the truth and BED data available. This would be so helpful. For data combining/organizing, my goal was to have...

Tamsen; Thanks so much for making these available. I've organized them into a data collection, provided download scripts, and prepared bcbio and Common Workflow Language setups to make it easy...

Tamsen; Thanks much for this and for responding while on your long trip. That's an amazing adventure and definitely understood that you might be just slightly busy. I'd love to...

Tamsen; Wow, France and Switzerland are pretty good places to relax. Hope vacation is still going well and thanks for taking the time to help out with these comparisons. Your...