Sijie Chen

add Cohen's kappa

1

Can you please add Cohen's kappa as one metric? It is a good choice for imbalanced datasets

In torchdiffeq, odeint has a adjoint option to turn on seminorm? how should i pass parameters to the seminorm option in torchdyn? Merely passing a True gives an error. `dyn_odeint(...

why does my treeplot only appear partially?

2

like this?

Does grape supports multiplex network embedding?

4

and multi-layer network?

It's a useful feature and POT has included it (https://github.com/PythonOT/POT/blob/master/RELEASES.md) https://arxiv.org/abs/2103.04737

Why do i got ValueError: Empty feature data, giving up

2

I always got this error when running divide_and_conquer_pipeline. Why? ``` 64 @ut.logged() 65 @ut.timed_call() 66 @ut.expand_doc() (...) 114 random_seed: int = pr.random_seed, 115 ) -> AnnData: 116 """ 117 Directly...

errors about ot.gromov.cg

1

When running Since 0.8.1, cg was provided in `ot.optim.xxx`. but L119 makes the alternative importing useless. https://github.com/aristoteleo/spateo-release/blob/be1ab6d100f2ac2738dc3e379de78e494c3e8c0b/spateo/alignment/methods/paste.py#L114-L124 L119 should be the `pi, log = cg( ` to use previously imported...

Hi, I ran dca with scanpy and checked the maximum value of the matrix, np.max(adata_imputed.X) 185.14267 which is even smaller than the original raw counts' maximum np.max(adata.layers["counts"]) 296 How shall...

typo

1

'Take a look at tools in the external API or at the ecoystem page to get a start with other tools.' should be 'Take a look at tools in the...

or could you please show us how to port snopt codes to other platforms.