Chao Gao

Hi @vivianlu63 , NAs in the [email protected] can cause the error reported above. Best,

Hi, could you share the session info and the code that gave the error?

Thanks for the information. We changed the name of this R package a while ago (liger-->rliger), while the SeuratWrappers from previous version was trying to look for liger. Please install...

Hi Hanhuihong, Is it the pbmcsca (v3.0.0) from SeuratData you are working on? If possible, could you also share the code for the analysis (preprocessing, integration and plotting) so that...

Hi, For the `split.by = "orig.ident"` in ScaleData, RunOptimizeALS and RunQuantileNorm, is the "orig.ident" in your case referring to the names of the datasets when creating the object or the...

Hi Sam, Sorry for missing out this PR as well as the late response. Thank you very much for your time and effort into help improving LIGER. This `keep.meta` feature...

Hi @jowkar, This is a great suggestion! Really appreciate it. We will look into this and make a modification. Best,

Hi, Did you install LIGER from CRAN? To implement UINMF, you will have to install from github, which has incorporated the latest updates on LIGER.

Hi, DE analysis is performed on all of the genes included in the input (not just the highly variable genes used for iNMF). Best,