libcellml
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cellml
Various errors when trying to use libxml2 2.12
I normally use libxml2 2.9.13 and 2.9.14 and it's fine, but I have just tried to build libCellML with libxml2 2.12.0 and got the following errors:
-- The CXX compiler identification is Clang 17.0.5
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /opt/homebrew/opt/llvm/bin/clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test UNDEFINED_SYMBOLS_ALLOWED - ...
-- Performing Test UNDEFINED_SYMBOLS_ALLOWED - Failed
-- Found Python: /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/bin/python3.9 (found version "3.9.6") found components: Interpreter Development Development.Module Development.Embed
-- Performing Test HAVE_COVERAGE
-- Performing Test HAVE_COVERAGE - Success
-- Found Doxygen: /Users/Alan/bin/doxygen (found version "1.9.3") found components: doxygen missing components: dot
-- Found Sphinx: /opt/homebrew/opt/sphinx-doc/bin/sphinx-build
-- Found SWIG: /opt/homebrew/bin/swig (found suitable version "4.1.1", minimum required is "3")
-- Performing Test LLVM_COVERAGE_COMPILER_FLAGS_OK
-- Performing Test LLVM_COVERAGE_COMPILER_FLAGS_OK - Success
-- Performing Test GCC_COVERAGE_COMPILER_FLAGS_OK
-- Performing Test GCC_COVERAGE_COMPILER_FLAGS_OK - Success
-- Performing Test Iconv_IS_BUILT_IN
-- Performing Test Iconv_IS_BUILT_IN - Failed
-- Found LibXml2: /opt/homebrew/opt/libxml2/lib/libxml2.dylib (found version "2.12.0")
-- Found ZLIB: /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk/usr/lib/libz.tbd (found version "1.2.12")
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- The C compiler identification is Clang 17.0.5
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /opt/homebrew/opt/llvm/bin/clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Found Threads: TRUE
-- Configuring done (2.0s)
-- Generating done (0.1s)
-- Build files have been written to: /Users/Alan/libCellML/build
[59/257] Building CXX object src/CMakeFiles/cellml.dir/xmlnode.cpp.o
FAILED: src/CMakeFiles/cellml.dir/xmlnode.cpp.o
/usr/local/bin/buildcache /opt/homebrew/opt/llvm/bin/clang++ -Dcellml_EXPORTS -I/Users/Alan/libCellML/build/src/api -I/Users/Alan/libCellML/src/api -I/Users/Alan/libCellML/src/api/libcellml/module -I/Users/Alan/libCellML/build/src -I/opt/homebrew/opt/libxml2/include/libxml2 -g -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=10.15 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fprofile-arcs -ftest-coverage -fprofile-instr-generate -fcoverage-mapping -Wall -W -Werror -MD -MT src/CMakeFiles/cellml.dir/xmlnode.cpp.o -MF src/CMakeFiles/cellml.dir/xmlnode.cpp.o.d -o src/CMakeFiles/cellml.dir/xmlnode.cpp.o -c /Users/Alan/libCellML/src/xmlnode.cpp
/Users/Alan/libCellML/src/xmlnode.cpp:313:5: error: use of undeclared identifier 'xmlKeepBlanksDefault'
313 | xmlKeepBlanksDefault(1);
| ^
1 error generated.
[62/257] Building CXX object src/CMakeFiles/cellml.dir/xmldoc.cpp.o
FAILED: src/CMakeFiles/cellml.dir/xmldoc.cpp.o
/usr/local/bin/buildcache /opt/homebrew/opt/llvm/bin/clang++ -Dcellml_EXPORTS -I/Users/Alan/libCellML/build/src/api -I/Users/Alan/libCellML/src/api -I/Users/Alan/libCellML/src/api/libcellml/module -I/Users/Alan/libCellML/build/src -I/opt/homebrew/opt/libxml2/include/libxml2 -g -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=10.15 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fprofile-arcs -ftest-coverage -fprofile-instr-generate -fcoverage-mapping -Wall -W -Werror -MD -MT src/CMakeFiles/cellml.dir/xmldoc.cpp.o -MF src/CMakeFiles/cellml.dir/xmldoc.cpp.o.d -o src/CMakeFiles/cellml.dir/xmldoc.cpp.o -c /Users/Alan/libCellML/src/xmldoc.cpp
/Users/Alan/libCellML/src/xmldoc.cpp:51:50: error: member access into incomplete type 'xmlParserCtxt' (aka '_xmlParserCtxt')
51 | auto doc = reinterpret_cast<XmlDoc *>(context->_private);
| ^
/opt/homebrew/opt/libxml2/include/libxml2/libxml/tree.h:40:16: note: forward declaration of '_xmlParserCtxt'
40 | typedef struct _xmlParserCtxt xmlParserCtxt;
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:84:5: error: use of undeclared identifier 'xmlInitParser'
84 | xmlInitParser();
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:85:32: error: use of undeclared identifier 'xmlNewParserCtxt'; did you mean 'xmlParserCtxt'?
85 | xmlParserCtxtPtr context = xmlNewParserCtxt();
| ^
/opt/homebrew/opt/libxml2/include/libxml2/libxml/tree.h:40:31: note: 'xmlParserCtxt' declared here
40 | typedef struct _xmlParserCtxt xmlParserCtxt;
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:86:12: error: member access into incomplete type 'xmlParserCtxt' (aka '_xmlParserCtxt')
86 | context->_private = reinterpret_cast<void *>(this);
| ^
/opt/homebrew/opt/libxml2/include/libxml2/libxml/tree.h:40:16: note: forward declaration of '_xmlParserCtxt'
40 | typedef struct _xmlParserCtxt xmlParserCtxt;
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:87:5: error: no matching function for call to 'xmlSetStructuredErrorFunc'
87 | xmlSetStructuredErrorFunc(context, structuredErrorCallback);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/opt/homebrew/opt/libxml2/include/libxml2/libxml/xmlerror.h:897:5: note: candidate function not viable: no known conversion from 'void (void *, xmlErrorPtr)' (aka 'void (void *, _xmlError *)') to 'xmlStructuredErrorFunc' (aka 'void (*)(void *, const _xmlError *)') for 2nd argument
897 | xmlSetStructuredErrorFunc (void *ctx,
| ^
898 | xmlStructuredErrorFunc handler);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Alan/libCellML/src/xmldoc.cpp:88:26: error: use of undeclared identifier 'xmlCtxtReadDoc'
88 | mPimpl->mXmlDocPtr = xmlCtxtReadDoc(context, reinterpret_cast<const xmlChar *>(input.c_str()), "/", nullptr, 0);
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:89:5: error: use of undeclared identifier 'xmlFreeParserCtxt'; did you mean 'xmlParserCtxt'?
89 | xmlFreeParserCtxt(context);
| ^
/opt/homebrew/opt/libxml2/include/libxml2/libxml/tree.h:40:31: note: 'xmlParserCtxt' declared here
40 | typedef struct _xmlParserCtxt xmlParserCtxt;
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:91:5: error: use of undeclared identifier 'xmlCleanupParser'
91 | xmlCleanupParser();
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:92:5: error: use of undeclared identifier 'xmlCleanupGlobals'
92 | xmlCleanupGlobals();
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:119:5: error: use of undeclared identifier 'xmlInitParser'
119 | xmlInitParser();
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:120:32: error: use of undeclared identifier 'xmlNewParserCtxt'; did you mean 'xmlParserCtxt'?
120 | xmlParserCtxtPtr context = xmlNewParserCtxt();
| ^
/opt/homebrew/opt/libxml2/include/libxml2/libxml/tree.h:40:31: note: 'xmlParserCtxt' declared here
40 | typedef struct _xmlParserCtxt xmlParserCtxt;
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:121:12: error: member access into incomplete type 'xmlParserCtxt' (aka '_xmlParserCtxt')
121 | context->_private = reinterpret_cast<void *>(this);
| ^
/opt/homebrew/opt/libxml2/include/libxml2/libxml/tree.h:40:16: note: forward declaration of '_xmlParserCtxt'
40 | typedef struct _xmlParserCtxt xmlParserCtxt;
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:122:5: error: no matching function for call to 'xmlSetStructuredErrorFunc'
122 | xmlSetStructuredErrorFunc(context, structuredErrorCallback);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/opt/homebrew/opt/libxml2/include/libxml2/libxml/xmlerror.h:897:5: note: candidate function not viable: no known conversion from 'void (void *, xmlErrorPtr)' (aka 'void (void *, _xmlError *)') to 'xmlStructuredErrorFunc' (aka 'void (*)(void *, const _xmlError *)') for 2nd argument
897 | xmlSetStructuredErrorFunc (void *ctx,
| ^
898 | xmlStructuredErrorFunc handler);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Alan/libCellML/src/xmldoc.cpp:123:26: error: use of undeclared identifier 'xmlCtxtReadDoc'
123 | mPimpl->mXmlDocPtr = xmlCtxtReadDoc(context, reinterpret_cast<const xmlChar *>(input.c_str()), "/", nullptr, 0);
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:124:143: error: use of undeclared identifier 'XML_CHAR_ENCODING_ASCII'
124 | xmlParserInputBufferPtr buf = xmlParserInputBufferCreateMem(reinterpret_cast<const char *>(mathMLDTD.c_str()), sizeMathmlDTDUncompressed, XML_CHAR_ENCODING_ASCII);
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:125:49: error: use of undeclared identifier 'XML_CHAR_ENCODING_ASCII'
125 | xmlDtdPtr dtd = xmlIOParseDTD(nullptr, buf, XML_CHAR_ENCODING_ASCII);
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:126:29: error: member access into incomplete type 'xmlParserCtxt' (aka '_xmlParserCtxt')
126 | xmlValidateDtd(&(context->vctxt), mPimpl->mXmlDocPtr, dtd);
| ^
/opt/homebrew/opt/libxml2/include/libxml2/libxml/tree.h:40:16: note: forward declaration of '_xmlParserCtxt'
40 | typedef struct _xmlParserCtxt xmlParserCtxt;
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:129:5: error: use of undeclared identifier 'xmlFreeParserCtxt'; did you mean 'xmlParserCtxt'?
129 | xmlFreeParserCtxt(context);
| ^
/opt/homebrew/opt/libxml2/include/libxml2/libxml/tree.h:40:31: note: 'xmlParserCtxt' declared here
40 | typedef struct _xmlParserCtxt xmlParserCtxt;
| ^
/Users/Alan/libCellML/src/xmldoc.cpp:131:5: error: use of undeclared identifier 'xmlCleanupParser'
131 | xmlCleanupParser();
| ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
[66/257] Building CXX object src/CMakeFiles/cellml.dir/printer.cpp.o
FAILED: src/CMakeFiles/cellml.dir/printer.cpp.o
/usr/local/bin/buildcache /opt/homebrew/opt/llvm/bin/clang++ -Dcellml_EXPORTS -I/Users/Alan/libCellML/build/src/api -I/Users/Alan/libCellML/src/api -I/Users/Alan/libCellML/src/api/libcellml/module -I/Users/Alan/libCellML/build/src -I/opt/homebrew/opt/libxml2/include/libxml2 -g -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=10.15 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fprofile-arcs -ftest-coverage -fprofile-instr-generate -fcoverage-mapping -Wall -W -Werror -MD -MT src/CMakeFiles/cellml.dir/printer.cpp.o -MF src/CMakeFiles/cellml.dir/printer.cpp.o.d -o src/CMakeFiles/cellml.dir/printer.cpp.o -c /Users/Alan/libCellML/src/printer.cpp
/Users/Alan/libCellML/src/printer.cpp:143:5: error: use of undeclared identifier 'xmlKeepBlanksDefault'
143 | xmlKeepBlanksDefault(0);
| ^
/Users/Alan/libCellML/src/printer.cpp:595:5: error: use of undeclared identifier 'xmlKeepBlanksDefault'
595 | xmlKeepBlanksDefault(0);
| ^
2 errors generated.
[72/257] Building CXX object tests/CMakeFiles/test_parser.dir/parser/libxml_user.cpp.o
FAILED: tests/CMakeFiles/test_parser.dir/parser/libxml_user.cpp.o
/usr/local/bin/buildcache /opt/homebrew/opt/llvm/bin/clang++ -I/Users/Alan/libCellML/build/tests -I/Users/Alan/libCellML/tests -I/Users/Alan/libCellML/build/src/api -I/Users/Alan/libCellML/src/api -I/Users/Alan/libCellML/src/api/libcellml/module -I/opt/homebrew/opt/libxml2/include/libxml2 -I/Users/Alan/libCellML/tests/gtest/include -g -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.0.sdk -mmacosx-version-min=10.15 -Wall -W -Werror -MD -MT tests/CMakeFiles/test_parser.dir/parser/libxml_user.cpp.o -MF tests/CMakeFiles/test_parser.dir/parser/libxml_user.cpp.o.d -o tests/CMakeFiles/test_parser.dir/parser/libxml_user.cpp.o -c /Users/Alan/libCellML/tests/parser/libxml_user.cpp
/Users/Alan/libCellML/tests/parser/libxml_user.cpp:50:5: error: no matching function for call to 'xmlSetStructuredErrorFunc'
50 | xmlSetStructuredErrorFunc(context, structuredErrorCallback);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/opt/homebrew/opt/libxml2/include/libxml2/libxml/xmlerror.h:897:5: note: candidate function not viable: no known conversion from 'void (void *, xmlErrorPtr)' (aka 'void (void *, _xmlError *)') to 'xmlStructuredErrorFunc' (aka 'void (*)(void *, const _xmlError *)') for 2nd argument
897 | xmlSetStructuredErrorFunc (void *ctx,
| ^
898 | xmlStructuredErrorFunc handler);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Alan/libCellML/tests/parser/libxml_user.cpp:57:5: error: use of undeclared identifier 'xmlCleanupGlobals'; did you mean 'xmlCleanupThreads'?
57 | xmlCleanupGlobals();
| ^~~~~~~~~~~~~~~~~
| xmlCleanupThreads
/opt/homebrew/opt/libxml2/include/libxml2/libxml/threads.h:71:4: note: 'xmlCleanupThreads' declared here
71 | xmlCleanupThreads(void);
| ^
/Users/Alan/libCellML/tests/parser/libxml_user.cpp:57:5: error: 'xmlCleanupThreads' is deprecated [-Werror,-Wdeprecated-declarations]
57 | xmlCleanupGlobals();
| ^
/opt/homebrew/opt/libxml2/include/libxml2/libxml/threads.h:69:1: note: 'xmlCleanupThreads' has been explicitly marked deprecated here
69 | XML_DEPRECATED
| ^
/opt/homebrew/opt/libxml2/include/libxml2/libxml/xmlversion.h:447:43: note: expanded from macro 'XML_DEPRECATED'
447 | # define XML_DEPRECATED __attribute__((deprecated))
| ^
/Users/Alan/libCellML/tests/parser/libxml_user.cpp:74:5: error: no matching function for call to 'xmlSetStructuredErrorFunc'
74 | xmlSetStructuredErrorFunc(context, structuredErrorCallback);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/opt/homebrew/opt/libxml2/include/libxml2/libxml/xmlerror.h:897:5: note: candidate function not viable: no known conversion from 'void (void *, xmlErrorPtr)' (aka 'void (void *, _xmlError *)') to 'xmlStructuredErrorFunc' (aka 'void (*)(void *, const _xmlError *)') for 2nd argument
897 | xmlSetStructuredErrorFunc (void *ctx,
| ^
898 | xmlStructuredErrorFunc handler);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/Alan/libCellML/tests/parser/libxml_user.cpp:79:5: error: use of undeclared identifier 'xmlCleanupGlobals'; did you mean 'xmlCleanupThreads'?
79 | xmlCleanupGlobals();
| ^~~~~~~~~~~~~~~~~
| xmlCleanupThreads
/opt/homebrew/opt/libxml2/include/libxml2/libxml/threads.h:71:4: note: 'xmlCleanupThreads' declared here
71 | xmlCleanupThreads(void);
| ^
/Users/Alan/libCellML/tests/parser/libxml_user.cpp:79:5: error: 'xmlCleanupThreads' is deprecated [-Werror,-Wdeprecated-declarations]
79 | xmlCleanupGlobals();
| ^
/opt/homebrew/opt/libxml2/include/libxml2/libxml/threads.h:69:1: note: 'xmlCleanupThreads' has been explicitly marked deprecated here
69 | XML_DEPRECATED
| ^
/opt/homebrew/opt/libxml2/include/libxml2/libxml/xmlversion.h:447:43: note: expanded from macro 'XML_DEPRECATED'
447 | # define XML_DEPRECATED __attribute__((deprecated))
| ^
6 errors generated.
ninja: build stopped: subcommand failed.
