carveme icon indicating copy to clipboard operation
carveme copied to clipboard
verified publisher icon cdanielmachado

containerizing CarveMe

Open zoey-rw opened this issue 4 years ago • 3 comments

Hi, I'm interested in running CarveMe within a Docker or Singularity container. One of the major hurdles is getting CPLEX to work since it requires a license. Switching to Gurobi seems like it might be a good option (there have been updates since 2018, so hopefully it would not be as slow as you reported in #25). Do you know if CarveMe has successfully been run in a container before, or is there any guidance you could provide?

Thanks, Zoey

zoey-rw avatar Sep 02 '21 14:09 zoey-rw

Hi Zoey,

Yes it is possible to run CarveMe inside a docker container. I have done it with cplex. Unfortunately we don't get the same results when running CarveMe with Gurobi.

cdanielmachado avatar Sep 03 '21 07:09 cdanielmachado

Thank you for your response! Could you provide any additional information on your docker setup with CPLEX? Or how results differ with Gurobi?

zoey-rw avatar Sep 08 '21 12:09 zoey-rw

Hi, were you able to run CarveMe inside docker? I'm a bit ashamed I haven't been able to run it not even with the conda environment.

netza2 avatar May 13 '23 15:05 netza2