AutoDock-Vina
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ccsb-scripps
AutoDock Vina
Hello! I am trying to perform a docking with a molecule containing Ruthenium using AutoDock Vina (v. 1.2.3) and the vina scoring function but, despite adding the corresponding parameters in...
How to use vina for small molecule and small molecule docking
I running AutoDock Vina version 1.2.5 on Mgltool 1.5.7 with batch Ligand parameter. And I have met the result the following error occurred basic_string::_M_replace_aux Anyone have an idea about the...
Dear all, Upon reading a tutorial on partially protein-flexible docking using Vina, I couldn’t understand how it differs from ADFR. I’ve read both of the papers on Vina v1.2.0 and...
I tried to validate the accuracy of Vina on the DUD-E dataset according to the AutoDock Vina v1.2.0 paper and the supporting information description. After adding hydrogens to the receptor...
Hey guys, First of all I'm sorry. Because I'm literally new to all this and I'm struggling a lot to install the program. After a couple of days with PyMol...
Hi everyone I am trying to install vina by the doc: https://pypi.org/project/vina/ This is my code in anaconda: ``` conda create -n vina python=3 -y conda activate vina conda install...
Hi all- I am relatively new to this but have been trouble shooting all morning. Whenever i get to $ pip install vina this is the output i get. I...
I noticed `vinardo` lacks in docstrings for `Vina` class though the scoring function is available for docking using AutoDock vina now. Users might know its availability if they read vina's...