AutoDock-GPU
AutoDock-GPU copied to clipboard
cudaGetDeviceCount failed initialization error
When I run:
[jr@login1 AutoDock-GPU-develop]$ make DEVICE=CUDA NUMWI=128
[jr@login1 AutoDock-GPU-develop]$ ./bin/autodock_gpu_128wi --ffile ./input/1stp/derived/1stp_protein.maps.fld --lfile ./input/1stp/derived/1stp_ligand.pdbqt --nrun 1
I get:
AutoDock-GPU version: v1.5-release
Running 1 docking calculation
cudaGetDeviceCount failed initialization error
autodock_gpu_128wi: ./host/src/performdocking.cpp:128: void setup_gpu_for_docking(GpuData&, GpuTempData&): Assertion `0' failed.
Aborted
My cluster info is:
[jr@login1 AutoDock-GPU-develop]$ lscpu
Architecture: ppc64le
Byte Order: Little Endian
CPU(s): 160
On-line CPU(s) list: 0-159
Thread(s) per core: 4
Core(s) per socket: 20
Socket(s): 2
NUMA node(s): 6
Model: 2.2 (pvr 004e 1202)
Model name: POWER9, altivec supported
CPU max MHz: 3800.0000
CPU min MHz: 2300.0000
L1d cache: 32K
L1i cache: 32K
L2 cache: 512K
L3 cache: 10240K
NUMA node0 CPU(s): 0-79
NUMA node8 CPU(s): 80-159
NUMA node252 CPU(s):
NUMA node253 CPU(s):
NUMA node254 CPU(s):
NUMA node255 CPU(s):
[jr@login1 AutoDock-GPU-develop]$ nvidia-smi
Thu Jun 2 10:48:48 2022
+-----------------------------------------------------------------------------+
| NVIDIA-SMI 440.64.00 Driver Version: 440.64.00 CUDA Version: 10.2 |
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. |
|===============================+======================+======================|
| 0 Tesla V100-SXM2... Off | 00000004:04:00.0 Off | 0 |
| N/A 38C P0 35W / 300W | 0MiB / 16160MiB | 0% Default |
+-------------------------------+----------------------+----------------------+
| 1 Tesla V100-SXM2... Off | 00000035:03:00.0 Off | 0 |
| N/A 37C P0 35W / 300W | 0MiB / 16160MiB | 0% Default |
+-------------------------------+----------------------+----------------------+
+-----------------------------------------------------------------------------+
| Processes: GPU Memory |
| GPU PID Type Process name Usage |
|=============================================================================|
| No running processes found |
+-----------------------------------------------------------------------------+
[jr@login1 AutoDock-GPU-develop]$ nvcc -V
nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 2005-2019 NVIDIA Corporation
Built on Thu_Oct_24_17:58:26_PDT_2019
Cuda compilation tools, release 10.2, V10.2.89
Any ideas of what could be the issue?
@jrcodina96 This might be a potential driver issue as you're seeing this error:
cudaGetDeviceCount failed initialization error
Maybe this will help you: https://www.ibm.com/docs/en/cloud-paks/cp-management/1.1.0?topic=upgrade-nvidia-gpu-driver-fails-initialize