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Segmentation fault 11 error

Open Habacef opened this issue 3 years ago • 3 comments

I am following your tutorial, but with own molecules (a kinase and a 6 AA peptide) and it always returns "Segmentation fault 11". during the "agfr" command.

Habacef avatar Mar 23 '22 17:03 Habacef

Hi Habacef. Generally, Segmentation Fault errors are caused by memory allocation issues I think. I was having a similar issue until I noticed my drive was almost full. Maybe that's what's happening here? Hope this helps

patochinestrad avatar Apr 12 '22 23:04 patochinestrad

I encounter the same error but my drive has plenty of space. If I run the same command on another computer it works fine. Anyone has some ideas on the reason this happens?

andregiuseppecavalli avatar Apr 17 '24 09:04 andregiuseppecavalli

I think there are some cross-platform issues during installation arising from different compilers.

I actually recently made a Docker container which contains a fully working installation of ADFR (including ADCP), which works across Windows, Mac and Linux. You can pull it from here: https://hub.docker.com/r/simonbushell/adfr_docker

I hasten to add that it is "unofficial" and not supported by the ADFR authors

You can see the original Dockerfile and build instructions here if you wish to modify: https://github.com/simonbushell/adfr_docker

simonbushell avatar Apr 17 '24 13:04 simonbushell