shorah
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cbg-ethz
Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)
when I run shorah.py, I set '-S 100', but the results are not reproducible, (I downloaded and installed shorah in Nov-2018)
Dear Shorah developers, First, I would like to say that you have a great program that is very useful for local haplotype reconstruction, especially if we try to genotype across...
Hi, recently, I tried to use your tool " ShoRAH" to generate global reconstruction haplotypes, but I ran into some problems. So I try to run the tool on Linux...
I just pushed a new branch, [`gh-pages-2`](https://github.com/cbg-ethz/shorah/tree/gh-pages-2). Since it was originally forked from a [theme](https://github.com/jeromelachaud/freelancer-theme), it is not possible to directly make a PR. At least, I didn't know how...
Hello Dr. Zagordi, I apologize if this is an incredibly basic question - I just started working with command line programs and NGS data this summer (since June 2018) and...
when I run shorah.py, for some reason the program crashed or I terminated the program, and then I re-run shorah.py (with some parameters changed), will the previous generated intermediate files...
Hi, this is the error i get from the terminal: ``` Traceback (most recent call last): File "./shorah.py", line 142, in keep_files=options.k, alpha=options.a) File "/home/capemaster/Desktop/SHORAH/shorah-master/dec.py", line 399, in main proposed[beg]...
Nothing is written to reads-support.fas when only one haplotype was sampled in the history. In principle, it should contain that single haplotype with 100% posterior and all reads assigned to...