Christopher Olm

Following up on this, (belatedly), but: @a3sha2 thanks for the new release (I just built 0.2.6.1)! I've been testing ASLPREP with my "unequal" label/control dataset again. It looks like if...

@a3sha2 Thanks, using the bids validator should be a help! @HenkMutsaerts Thanks so much for the info! In this particular case, the person programming the sequence asked how much time...

Thanks so much for your thoughts on this! We have some scans from some patients with dementia that tend to move somewhat erratically, and some preliminary data indicates we're doing...

(I preemptively apologize for how long this ended up) I’ve been thinking about the dummy scans/volume issue a bit more and I think it makes more sense to have some...

It looks like the way you're set up is with aslprep installed as a module. (-v used as a flag inside the aslprep command as you have it turns on...

I had to make a "pseudo-BIDS" directory to get my data processed correctly using 0.2.8, and with the "--skip-bids-validation" flag I had not needed the dataset_description.json at all. With the...

Fair enough. Feel free to close unless you have any reason to look into this further

Thanks! I'll merge the deltam and M0 into the asl.nii.gz and give it another go.

Unfortunately, I've ended up with another error. The changes I made to my BIDS files: Merged the m0scan and deltam into a single 4D image ("_asl.nii.gz") My aslcontext.tsv changed to:...

This error turned out to be due to re-running a failed session without removing the working directory. However, now I've run into a different problem-- with the deltam and m0scan...