malaria_hero
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Published
20 hours ago •
caticoa3
caticoa3
Deployable and containerized CNN for detection of malaria parasites in blood smears where images have been segmented into single cells.
Modified image from the Center For Infectious Disease Research
Malaria Hero
Web application that classifies single cells as parasitized or normal; and prioritizes patients based on the percentage of infected cells. More background can be found in this medium post.
Created thanks to publicly available data from the NIH.
Running locally
Option 1: in a python enviroment
use the provided environment.yml to create the conda environment and run the following
cd src/
python dash_app.py
Option 2: in a docker swarm
cd src/
make build # to build the needed containers and environment
make deploy # to run
in both cases you can navigate to 0.0.0.0:5000 in your favorite flavor of internet browser
Demo
A live demo can be found at malariahero.org
caticoa3