Cathal King comments

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                                            Cathal King

upload multiple Visium samples to the spatialLIBD shiny app

Thanks for your reply @lcolladotor My 6 Visium samples will be contained within their own seperate SPE objects so I have 6 SPE's in total. They are related in terms...

registration using gene expression information

@kpclifton Can I use STalign for Visium data and a matched TIFF (mass spec data)? For the mass spec data I also have a table with m/z values and x-y...

samtools ```split``` on a select list of tags

Thanks for your reply @daviesrob. I will just reply here with exactly what I want to do and maybe you can suggest the best option. I have 1 BAM file...

BD data

BD Rhapsody v1 (27 bp barcode, 8 bp UMI) I believe we are working with the "V1 Library" as shown in the below link. The BD library structure is analagous...