encoding error when reading the example file

[Raniita]

Hi!

Im actually enrolled on a task that involve me to use the QC seabird python package. I actually been following the notebooks examples, but on the first first step i found a error (spooky error).

I guess that its something related python encoding, inclusive some pip packages that i had been installed.

Some help would be appreciated :D

My code (using jupyter too):

%matplotlib inline

from seabird.cnv import fCNV

# Reading the CNV file (8038)

#profile = fCNV('S8038_2021_01_13_M1.cnv')

# Reading the example file 
profile = fCNV('dPIRX003.cnv')

The error:

---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-5-3f5cca2014d9> in <module>
      4 
      5 # Reading the example file
----> 6 profile = fCNV('dPIRX003.cnv')

~/.local/lib/python3.9/site-packages/seabird/cnv.py in __init__(self, filename, defaultsfile)
    572 
    573         try:
--> 574             super(fCNV, self).__init__(text, defaults)
    575         except CNVError as e:
    576             if e.tag == 'noparsingrule':

~/.local/lib/python3.9/site-packages/seabird/cnv.py in __init__(self, raw_text, defaults)
     56         self.attrs = {}
     57         # ----
---> 58         self.rule, self.parsed = load_rule(self.raw_text)
     59 
     60         if not hasattr(self, 'parsed'):

~/.local/lib/python3.9/site-packages/seabird/utils.py in load_rule(raw_text)
     75         text = pkg_resources.resource_string(
     76                 __name__, os.path.join(rules_dir, rule_file))
---> 77         rule = json.loads(text.decode('utf-8'), encoding="utf-8")
     78         # Should I load using codec, for UTF8?? Do I need it?
     79         # f = codecs.open(rule_file, 'r', 'utf-8')

/usr/lib/python3.9/json/__init__.py in loads(s, cls, object_hook, parse_float, parse_int, parse_constant, object_pairs_hook, **kw)
    357     if parse_constant is not None:
    358         kw['parse_constant'] = parse_constant
--> 359     return cls(**kw).decode(s)

TypeError: __init__() got an unexpected keyword argument 'encoding'

Actually using Python3.9, matplotlib and seabird last version.

Thanks a lot!

[jakobdoerr]

Hi, I see the same problem with python 3.9. The 'encoding' parameter seems to be deprecated in json.loads since python 3.9. From the Python 3.9 changes (https://docs.python.org/dev/whatsnew/3.9.html#removed): 'The encoding parameter of json.loads() has been removed. As of Python 3.1, it was deprecated and ignored; using it has emitted a DeprecationWarning since Python 3.8. (Contributed by Inada Naoki in bpo-39377)'

For your problem, I suggest using python 3.8 or earlier.

[Raniita]

Yeah... Seems like that. I was trying to refactor the source code and removing the 'encoding' parameter but didnt work tbh...

I will try python 3.8.

Thank you!

[jakobdoerr]

Hm, removing the lines in the code is a good idea. I tried removing the encoding parameter from the code, and now it works for me on python 3.9.2. You have to remove it from 2 places though. Once in utils.py (line 77), and once in cnv.py (line 175). Cheers

[Raniita]

Using Jupyter Notebooks, i forgot restart when changing that lines on the package... that's the reason because didn't work x)

However, i try your changes with a fresh install of the package and now works fine! Thank you!!

[NeptuneProjects]

Having the same error; @jakobdoerr thanks for identifying the lines that need to be modified. Any plans to incorporate these changes into an updated release?