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cartoonist
Pan-genome Seed Index
The seed hits are not stored anywhere right now. Until resolving issue #7, saving the intermediate seed hits to a file would be useful. A command-line option should be added...
The reads should be aligned to the candidate locations by extending the seed hits found during the seed finding phase. All alignments will be reported based on the seed hits.
The text and its index of the set of maximal paths can be dumped to the file and be re-used in later runs. Apart from that, the list of nodes...
For some graph iterators, e.g. BFS iterator, reallocating all required memory over on each traversal slows down the process when the graph should be traversed multiple times. Adding an interface...
The nodes with zero out-degree are not traversed.
It is assumed that the genome graph is DAG when I have been developing so far. However, not all genome graphs are DAG, e.g. overlap graphs. The code needs to...
The code style is not consistent throughout the project. Most notable inconsistencies are: - variable names and naming convention - in some cases, type should be manifest (avoid using `auto`...