Carlos Talavera-López

Hi I'm trying to load a set of VCF files into Artemis for Mac. I've produced the VCF v4.1 files using FreeBayes and they have been phased using BEAGLE. After...

QUESTION: Using diffxpy with multiple groups

3

Hi, I'm trying to use `diffxpy` with an AnnData object that has been clustered using the Leiden algorithm. When I run the following command: `wilcox_test = de.test.wilcoxon(data = batches_bbknn, grouping...

How to build custom single cell dataset

12

Hi, I find this method really cool and promising but I am having issues trying to implement it to my data. Can you provide a vignette (or section of one)...

Hi I'm using fermi to assemble a very large animal genome with a single 180-bp Illumina HiSeq library. In this case, with the default parameters FERMI runs smoothly up to...

RuntimeError: CUDA error: CUBLAS_STATUS_EXECUTION_FAILED when calling `cublasSgemm`

4

Hi, Thank you for developing `scNym`, I have been using it a lot for label transfer tasks and it is great!. So far, my workflow has worked flawlessly until I...

Downstream analysis of clusters

1

Hi! Thanks very much for this amazing tool. So far I have been having really good results with my data, but I would like to move forwards the tutorial you...

ValueError: need at least one array to concatenate

3

Hi, I'm running DP_GP_cluster with 19 samples and ~ 8000 genes. This has worked in the past, although it took a long time. However, this time I get the following...

Error running train.py

1

Hi, I'm trying to run the toy example, but I get the following error (See attachment). Any ideas of what may be the issue? I have tried using a Linux...