snakemake-novice-bioinformatics
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Mention Snakemake wrappers
from @cmeesters:
we recommend using Snakemake wrapper to handle awkward programs to increase the stability of workflows wherever possible. There is not even an outlook to wrappers. This is - IMO - a major flaw.
Snakemake wrappers are available for these tools:
https://snakemake-wrappers.readthedocs.io/en/stable/wrappers/fastqc.html https://snakemake-wrappers.readthedocs.io/en/stable/wrappers/kallisto.html https://snakemake-wrappers.readthedocs.io/en/stable/wrappers/salmon.html https://snakemake-wrappers.readthedocs.io/en/stable/wrappers/multiqc.html
But not for the older tools velvet or fastx_toolkit.