SDC-BIDS-sMRI
SDC-BIDS-sMRI copied to clipboard
Issue with append in the first notebook
In the T1 and T2 relaxation and image contrast section, there is a tiny bug. You have tried to concatenate two data frames with append
attribute. append
is deprecated and if you try to run the cell, you will face an error. Use concate
instead.
T1_dict = {'GM':1200, 'WM':800, 'CSF':4000, 'Bone':500}
T2_dict = {'GM':110, 'WM':80, 'CSF':750, 'Bone':50}
T1_duration = np.arange(0,4500,500)
T2_duration = np.arange(0,500,100)
relax_df = pd.DataFrame()
for tissue,T1 in T1_dict.items():
_df = pd.DataFrame()
Mz = get_Mz(T1,T1_duration)
_df['time'] = T1_duration
_df['signal'] = Mz
_df['relaxation'] = 'T1'
_df['tissue'] = tissue
relax_df = relax_df.append(_df)
relax_df = pd.concat([relax_df,_df])