Environment Set Up

[mirhnius]

I tried to follow the instructions for Linux to create a Conda environment. However, I could not run the notebooks.

cd SDC-BIDS-sMRI conda create -p ./SDC_sMRI_workshop_2021 source activate $(pwd)/SDC_sMRI_workshop_2021 conda install numpy pandas scipy scikit-learn matplotlib seaborn jupyter ipykernel nb_conda conda install -c conda-forge awscli nibabel nilearn lxml statsmodels pip install pybids

It seems there is a problem with nb_conda package. I tried once without this package; all other libraries work fine but I have a problem with pybids and Conda could not find it.