carleton-envbiotech

I have not managed to solve it yet, although this may be related to having DRAM natively installed and/or a database issue. I am going to try and do everything...

@yyyuechen any idea how you would apply this to using it with conda? The commands aren't working for me and I am getting the same error message after a fresh...

I tried this again for the same genome using V11 (default installed by DRAM) and V12 (most up to date version available from dbCAN) to annotate a single genome with...

I ran into this issue as well, not sure if it is on dbCAN's end or a connectivity issue. I tried providing the following argument to a previous version of...

I tried using the following command where I had the dbCAN databases downloaded from a prior DRAM installation: `sudo /datastore/tools/gregoire/envs/DRAM/bin/DRAM-setup.py prepare_databases --output_dir /datastore/researchdata/DRAM_data --dbcan_loc '/datastore/researchdata/dram/dbCAN-HMMdb-V11.txt' --dbcan_fam_activities '/datastore/researchdata/dram/CAZyDB.08062022.fam-activities.txt' --threads 40` And...

This issue seems to have resolved, but it looks like it is downloading v11 when there is a v12 out.

I ran into this same issue. But when I tired manually editing the last line of the environment.yaml file, and re-installing with conda, I ended up with the following error...

I ended up using the edit provided by @tpall in the environment.yaml, but I could not verify manually in the DRAM-setup.py whether the change took effect. Following the error above...