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                                            Erick Cardenas

Errors if genome-grist run on Marine metagenomes

I am still having issues with this error. I think that there are still some rules that need to incorporate a check to ignore genomes that cannot be downloaded. These...

add check to ignore genome(s) that cannot be up downloaded

Apparently the error is solved if you delete the row with the problematic genome from the {output_folder}/gather/{sample}.gather.csv.gz. Just need to gunzip it, remove the row, and gzip it again.

add check to ignore genome(s) that cannot be up downloaded

I have come with a solution to ignore the problematic genomes. 1. I run grist asking for an intermediate target, instead of the full pipeline. This creates the signatures and...