Rob Reid

My figure looks sort of like skoudoro's for the CST, but more like the tutorial page's for the AF (it is a bit different, though): 

I tried deleting CST_L.trk, AF_L.trk and slr_transform.npy, rerunning bundle_extraction with the seeds in #1986, and then afq_tract_profiles, but I still get different tract profiles:  I am using CentOS7, so...

I forgot to mention that another reason to drop patch_radius is that I added masking, which gives a big speed boost. So altogether with a few x speedup from masking,...

@ShreyasFadnavis : Hi Shreyas, thanks for the kind words. > I only briefly looked at the code and realized that it could be easily integrated withing Patch2Self as an option....

Hi @skoudoro, > I would like to know what is the next step concerning this PR @ShreyasFadnavis and @captainnova. > > +1 for integrating within Patch2Self as an option That's...

> We plan to talk about your PR during the DIPY online meeting tomorrow (October 7th, 2021 | 1pm EST / 7pm CET / 10am PT). > > It would...

Hi @skoudoro, I apologize; further testing showed that the apparent slowdown only happens while running in a debugger. I was doing that because of the dti bug in 1.7.0, and...

> I think that we can introduce some logic where if the user selected NNLS and passed a step that keyword argument gets ignored (and removed from the fit_kwargs in...

OK, I probably will use --ignore_trigger_times on these DWIs since we do not do cardiac gating. But I do not see (0018,1060) or (0020,9153) in this DICOM, although there is...

I agree. The discrepancy between the DICOM conformance statement for Philips 5.x and this data can be attributed to this data coming from Philips 2.6.3.6 and having sat in a...