cap_jmk

I experienced the error while installing deeptime in an isolated conda environment on the newest Ubuntu. As pip was pulling the default PyTorch, the error occured for plain PyTorch, too....

However, for deeptime it is required to install torch. Maybe you can try reproducing the error with pulling default torch on a CUDA machine with CUDA 11.1. While the bug...

Great fix 🚀 Under the hood of the torch bug, I realized another, similar bug, too. When installing from pip, the package does not always have the right c++ compilation...

From the user perspective, I think it is whatever floats the boat. When building packages that have deeptime as dependency, it would be useful to be able to reliably pull...

@clonker, did you upload it to PyPi, yet? I tried it out on the problematic machine, and it did indeed persist...

Maybe you are right, however, it felt like it belonged to the overall Markov modelling which is part of the deeptime package. I can for sure implement it from my...

Yes, I know what you mean. I will give my best to support you.

@clonker, yes i could give it a try. Where do you want to change something? I would sort it in ```deeptime/markov/_transition_counting.py```

Nice. Okay, I got a working sorting algorithm implemented. However, I would love that you review it before I start implementing it in ```deeptime```. I don't know why, but I...

I see what you meant. With the multi-dot, you would always do Θ(2n) operations, whereas if you implement the sorting manually, you would do O(sqrt(n)) operations. Or am I overlooking...