ConsensusTME
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Error: No genes in the gene sets could be matched to the identifiers in the expression data
Dear author,
My script worked quite well last year, but I got this error this year even I reinstalled the package:
> length(intersect(row.names(bulkExpMatrix), row.names(CIBERSORTGeneSet)))
[1] 510
> CIBERSORT <- ConsensusTME::geneSetEnrichment(bulkExpMatrix, CIBERSORTGeneSet) %>% data.frame()
Error in ConsensusTME::geneSetEnrichment(bulkExpMatrix, CIBERSORTGeneSet) :
Error: No genes in the gene sets could be matched to the identifiers in the expression data
Could you please have a look at this when you have time? Many thanks.
Kind regards, Birong