Error in cgpFlagCaVEMan.pl: Can't use an undefined value as an ARRAY reference...

[larsmew]

I have been using the docker image of cgpwgs v2.1.0 and it's been working great for more than 50 samples. However, I'm getting this issue for one sample when running the cgpFlagCaVEMan command:

Can't use an undefined value as an ARRAY reference at /opt/wtsi-cgp/lib/perl5/Sanger/CGP/CavemanPostProcessor/PostProcessor.pm line 560, <__ANONIO__> line 540.
 at /opt/wtsi-cgp/bin/cgpFlagCaVEMan.pl line 125.
Command exited with non-zero status 2
108.58user 0.85system 1:54.27elapsed 95%CPU (0avgtext+0avgdata 86040maxresident)k
0inputs+0outputs (0major+65360minor)pagefaults 0swaps

Any idea what's gone wrong here? Let me know if I can provide any further details.

Best, Lars