astir

astir copied to clipboard

ChaDub

list index out of range error in SCDataset.get_mu_init()

1

To reproduce this error: yaml file - > ``` cell_types: A: - marker1 - marker2 B: - marker1 - marker3 - maker 4 ``` and all markers are inside of...

ywu202300

Bumps [ipython](https://github.com/ipython/ipython) from 7.17.0 to 8.10.0. Release notes Sourced from ipython's releases. See https://pypi.org/project/ipython/ We do not use GitHub release anymore. Please see PyPI https://pypi.org/project/ipython/ Commits 15ea1ed release 8.10.0 560ad10...

dependabot[bot]

Bumps [certifi](https://github.com/certifi/python-certifi) from 2020.6.20 to 2022.12.7. Commits 9e9e840 2022.12.07 b81bdb2 2022.09.24 939a28f 2022.09.14 aca828a 2022.06.15.2 de0eae1 Only use importlib.resources's new files() / Traversable API on Python ≥3.11 ... b8eb5e9 2022.06.15.1...

dependabot[bot]

Bumps [pillow](https://github.com/python-pillow/Pillow) from 7.2.0 to 9.3.0. Release notes Sourced from pillow's releases. 9.3.0 https://pillow.readthedocs.io/en/stable/releasenotes/9.3.0.html Changes Initialize libtiff buffer when saving #6699 [@​radarhere] Limit SAMPLESPERPIXEL to avoid runtime DOS #6700 [@​wiredfool]...

dependabot[bot]

Bumps [py](https://github.com/pytest-dev/py) from 1.9.0 to 1.10.0. Changelog Sourced from py's changelog. 1.10.0 (2020-12-12) Fix a regular expression DoS vulnerability in the py.path.svnwc SVN blame functionality (CVE-2020-29651) Update vendored apipkg: 1.4...

dependabot[bot]

Bumps [joblib](https://github.com/joblib/joblib) from 0.16.0 to 1.2.0. Changelog Sourced from joblib's changelog. Release 1.2.0 Fix a security issue where eval(pre_dispatch) could potentially run arbitrary code. Now only basic numerics are supported....

dependabot[bot]

Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.25.10 to 1.26.5. Release notes Sourced from urllib3's releases. 1.26.5 :warning: IMPORTANT: urllib3 v2.0 will drop support for Python 2: Read more in the v2.0 Roadmap Fixed...

dependabot[bot]

ValueError: too many values to unpack (expected 3) from ast.predict_celltypes()

4

Hi, I am trying to predict cell types by calling `ast.predict_celltypes(dset : pd.DataFrame)`. I first wanted to test the function with the publicly available dataset `basel_22k_subset.h5ad` which is the one...

jgu13

Bumps [nbconvert](https://github.com/jupyter/nbconvert) from 5.6.1 to 6.3.0. Commits cefe0bf Release 6.3.0 a534fb9 Release 6.3.0b0 87920c5 Add changelog for 6.3.0 (#1669) dd6d9c7 add slide numbering (#1654) 5d2c5e2 Update state filter (#1664) 11ea593...

dependabot[bot]